Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 HNRNPDP1-201ENST00000439535 754 ntBASIC17.38■□□□□ 0.37
PCDH9Q9HC56 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 AC006277.1-201ENST00000624348 1610 ntBASIC17.38■□□□□ 0.37
PCDH9Q9HC56 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 ME2P1-201ENST00000426028 1970 ntBASIC17.38■□□□□ 0.37
PCDH9Q9HC56 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PCDH9Q9HC56 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 RPS2P28-201ENST00000314255 741 ntBASIC17.37■□□□□ 0.37
PCDH9Q9HC56 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 MRPL3P1-201ENST00000400109 1033 ntBASIC17.37■□□□□ 0.37
PCDH9Q9HC56 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 AC006557.2-201ENST00000592985 1240 ntBASIC17.37■□□□□ 0.37
PCDH9Q9HC56 AL773604.1-201ENST00000617417 272 ntBASIC17.37■□□□□ 0.37
PCDH9Q9HC56 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
PCDH9Q9HC56 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 AC009078.2-202ENST00000463353 338 ntBASIC17.36■□□□□ 0.37
PCDH9Q9HC56 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 MTHFR-217ENST00000641820 1569 ntBASIC17.36■□□□□ 0.37
PCDH9Q9HC56 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
PCDH9Q9HC56 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms