Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HIPK3Q9H422 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HIPK3Q9H422 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
HIPK3Q9H422 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HIPK3Q9H422 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HIPK3Q9H422 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HIPK3Q9H422 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HIPK3Q9H422 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HIPK3Q9H422 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HIPK3Q9H422 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 FAM220BP-201ENST00000377689 816 ntBASIC18.25■□□□□ 0.51
HIPK3Q9H422 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 AC135586.1-201ENST00000539323 574 ntBASIC18.25■□□□□ 0.51
HIPK3Q9H422 AC010336.2-201ENST00000564226 506 ntBASIC18.25■□□□□ 0.51
HIPK3Q9H422 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 AC093525.9-201ENST00000624961 1746 ntBASIC18.25■□□□□ 0.51
HIPK3Q9H422 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.25■□□□□ 0.51
HIPK3Q9H422 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 AC135050.7-201ENST00000624508 2218 ntBASIC18.25■□□□□ 0.51
HIPK3Q9H422 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HIPK3Q9H422 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 AL133373.2-201ENST00000623187 2828 ntBASIC18.24■□□□□ 0.51
HIPK3Q9H422 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 HTR7P1-202ENST00000624664 4411 ntBASIC18.24■□□□□ 0.51
HIPK3Q9H422 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 INE1-201ENST00000456273 945 ntBASIC18.24■□□□□ 0.51
HIPK3Q9H422 AC022494.1-201ENST00000466044 728 ntBASIC18.24■□□□□ 0.51
HIPK3Q9H422 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 SPTSSB-204ENST00000617024 1292 ntBASIC18.24■□□□□ 0.51
HIPK3Q9H422 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 IGHV3-72-202ENST00000621503 303 ntBASIC18.24■□□□□ 0.51
HIPK3Q9H422 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.24■□□□□ 0.51
HIPK3Q9H422 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HIPK3Q9H422 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HIPK3Q9H422 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
HIPK3Q9H422 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HIPK3Q9H422 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HIPK3Q9H422 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HIPK3Q9H422 DGCR5-201ENST00000399539 862 ntBASIC18.23■□□□□ 0.51
HIPK3Q9H422 AP006294.1-201ENST00000415407 339 ntBASIC18.23■□□□□ 0.51
HIPK3Q9H422 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.23■□□□□ 0.51
HIPK3Q9H422 GNAQP1-201ENST00000444815 1067 ntBASIC18.23■□□□□ 0.51
HIPK3Q9H422 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms