Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.39■□□□□ 0.54
TRAIPQ9BWF2 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
TRAIPQ9BWF2 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TRAIPQ9BWF2 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRAIPQ9BWF2 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.39■□□□□ 0.54
TRAIPQ9BWF2 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 AL627223.1-201ENST00000416693 442 ntBASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 AC092474.2-201ENST00000424288 719 ntBASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 KRT8P48-201ENST00000515599 1220 ntBASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 RARRES2P8-201ENST00000566335 367 ntBASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRAIPQ9BWF2 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 TFAMP1-201ENST00000412727 736 ntBASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 AC243562.1-201ENST00000560672 389 ntBASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 AC093028.1-201ENST00000622998 982 ntBASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 NKILA-202ENST00000614771 2598 ntBASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAIPQ9BWF2 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 AC124067.4-201ENST00000519691 2379 ntBASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAIPQ9BWF2 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms