Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC073508.3-201ENST00000619697 1419 ntBASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 NUS1P1-201ENST00000446295 882 ntBASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 IGHV3-41-201ENST00000613121 348 ntBASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 AL596087.1-201ENST00000400979 1969 ntBASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 AC006277.1-201ENST00000624348 1610 ntBASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 AC005363.2-201ENST00000618631 242 ntBASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 AC022532.1-201ENST00000624563 1728 ntBASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC28BQ9BUN5 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 SIGLEC30P-201ENST00000455569 941 ntBASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 AC083849.1-201ENST00000615227 514 ntBASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC28BQ9BUN5 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms