Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 SDHAP3-202ENST00000515467 728 ntBASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 AGER-203ENST00000375065 665 ntTSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 MPRIPP1-201ENST00000452433 1089 ntBASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 IGHJ2P-201ENST00000454480 60 ntBASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 ZNF767P-206ENST00000513792 565 ntBASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 SLC25A47P1-201ENST00000531577 414 ntBASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.75■□□□□ 0.75
SMC1BQ8NDV3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 FXNP2-201ENST00000411625 547 ntBASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms