Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.66■□□□□ 0.1
ZNF540Q8NDQ6 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 ALOX12P2-203ENST00000570921 1945 ntBASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 NAA38-203ENST00000575071 553 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
ZNF540Q8NDQ6 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.1
ZNF540Q8NDQ6 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 AC126755.1-201ENST00000525846 6405 ntBASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 AC092597.1-201ENST00000487352 616 ntBASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 AC092329.2-201ENST00000598402 547 ntBASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ZNF540Q8NDQ6 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 TSSC2-201ENST00000450217 709 ntBASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.63■□□□□ 0.09
ZNF540Q8NDQ6 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms