Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 AC093525.8-201ENST00000624099 1342 ntBASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AC093724.1-201ENST00000448659 1027 ntBASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AC093726.1-201ENST00000608064 963 ntBASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 MIR8072-201ENST00000614241 80 ntBASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 TUBB1P2-201ENST00000422712 1306 ntBASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 TUBB1P1-201ENST00000503144 1300 ntBASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AC092552.1-201ENST00000547243 906 ntBASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 HIST3H2BA-201ENST00000436555 524 ntBASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 KRT223P-202ENST00000449164 1292 ntBASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AC124947.2-201ENST00000547118 1133 ntBASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AL589702.1-201ENST00000641229 1509 ntBASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 RN7SL828P-201ENST00000607615 303 ntBASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
VPS13DQ5THJ4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 AC123567.1-201ENST00000548294 1261 ntBASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms