Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 AC090164.3-201ENST00000610780 2143 ntBASIC17.51■□□□□ 0.39
CHD9Q3L8U1 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.51■□□□□ 0.39
CHD9Q3L8U1 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CHD9Q3L8U1 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 MEP1AP4-201ENST00000423244 1087 ntBASIC17.5■□□□□ 0.39
CHD9Q3L8U1 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 AC093525.9-201ENST00000624961 1746 ntBASIC17.5■□□□□ 0.39
CHD9Q3L8U1 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 SLC25A47P1-201ENST00000531577 414 ntBASIC17.5■□□□□ 0.39
CHD9Q3L8U1 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 C2orf69P2-201ENST00000562032 1123 ntBASIC17.5■□□□□ 0.39
CHD9Q3L8U1 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 LINC01451-201ENST00000623792 534 ntBASIC17.5■□□□□ 0.39
CHD9Q3L8U1 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.5■□□□□ 0.39
CHD9Q3L8U1 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 MIR5189-201ENST00000577370 114 ntBASIC17.49■□□□□ 0.39
CHD9Q3L8U1 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 AC007551.1-201ENST00000457394 519 ntBASIC17.49■□□□□ 0.39
CHD9Q3L8U1 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms