Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.46■□□□□ 0.71
SF3A1Q15459 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SF3A1Q15459 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.46■□□□□ 0.71
SF3A1Q15459 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 AL021920.2-201ENST00000624828 1351 ntBASIC19.46■□□□□ 0.71
SF3A1Q15459 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 AL391256.1-201ENST00000443260 1855 ntBASIC19.46■□□□□ 0.71
SF3A1Q15459 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 NCF1C-201ENST00000438382 1427 ntBASIC19.46■□□□□ 0.71
SF3A1Q15459 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.46■□□□□ 0.71
SF3A1Q15459 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SF3A1Q15459 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.46■□□□□ 0.71
SF3A1Q15459 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.46■□□□□ 0.71
SF3A1Q15459 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.46■□□□□ 0.71
SF3A1Q15459 AL355877.3-201ENST00000622820 899 ntBASIC19.46■□□□□ 0.71
SF3A1Q15459 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SF3A1Q15459 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SF3A1Q15459 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.46■□□□□ 0.71
SF3A1Q15459 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.46■□□□□ 0.71
SF3A1Q15459 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.46■□□□□ 0.71
SF3A1Q15459 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
SF3A1Q15459 AL662844.4-201ENST00000606367 2838 ntBASIC19.46■□□□□ 0.71
SF3A1Q15459 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SF3A1Q15459 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.46■□□□□ 0.7
SF3A1Q15459 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.45■□□□□ 0.7
SF3A1Q15459 AC243591.1-201ENST00000452967 1364 ntBASIC19.45■□□□□ 0.7
SF3A1Q15459 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
SF3A1Q15459 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
SF3A1Q15459 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SF3A1Q15459 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SF3A1Q15459 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.45■□□□□ 0.7
SF3A1Q15459 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 FGFR3P6-201ENST00000457012 610 ntBASIC19.45■□□□□ 0.7
SF3A1Q15459 SART3-203ENST00000546611 1184 ntBASIC19.45■□□□□ 0.7
SF3A1Q15459 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.45■□□□□ 0.7
SF3A1Q15459 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.45■□□□□ 0.7
SF3A1Q15459 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.45■□□□□ 0.7
SF3A1Q15459 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.45■□□□□ 0.7
SF3A1Q15459 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.45■□□□□ 0.7
SF3A1Q15459 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SF3A1Q15459 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
SF3A1Q15459 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SF3A1Q15459 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SF3A1Q15459 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SF3A1Q15459 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.44■□□□□ 0.7
SF3A1Q15459 PCDH8P1-201ENST00000428983 2773 ntBASIC19.44■□□□□ 0.7
SF3A1Q15459 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SF3A1Q15459 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SF3A1Q15459 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SF3A1Q15459 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
SF3A1Q15459 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
SF3A1Q15459 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 HLA-A-202ENST00000376806 1854 ntBASIC19.44■□□□□ 0.7
SF3A1Q15459 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.44■□□□□ 0.7
SF3A1Q15459 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.44■□□□□ 0.7
SF3A1Q15459 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.44■□□□□ 0.7
SF3A1Q15459 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SF3A1Q15459 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SF3A1Q15459 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms