Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.72■□□□□ 0.43
COL4A4P53420 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.72■□□□□ 0.43
COL4A4P53420 AC234783.1-201ENST00000441761 496 ntBASIC17.72■□□□□ 0.43
COL4A4P53420 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 AC055876.2-201ENST00000531834 546 ntBASIC17.72■□□□□ 0.43
COL4A4P53420 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.72■□□□□ 0.43
COL4A4P53420 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.72■□□□□ 0.43
COL4A4P53420 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.72■□□□□ 0.43
COL4A4P53420 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL4A4P53420 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL4A4P53420 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.72■□□□□ 0.43
COL4A4P53420 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
COL4A4P53420 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL4A4P53420 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A4P53420 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.72■□□□□ 0.43
COL4A4P53420 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.71■□□□□ 0.43
COL4A4P53420 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL4A4P53420 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
COL4A4P53420 AL353779.1-201ENST00000434793 351 ntBASIC17.71■□□□□ 0.43
COL4A4P53420 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A4P53420 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.71■□□□□ 0.43
COL4A4P53420 AC106886.1-201ENST00000568660 600 ntBASIC17.71■□□□□ 0.43
COL4A4P53420 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.71■□□□□ 0.43
COL4A4P53420 AC008735.3-201ENST00000596646 500 ntBASIC17.71■□□□□ 0.43
COL4A4P53420 CHCHD2P3-201ENST00000603038 451 ntBASIC17.71■□□□□ 0.43
COL4A4P53420 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A4P53420 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
COL4A4P53420 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A4P53420 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.71■□□□□ 0.43
COL4A4P53420 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A4P53420 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL4A4P53420 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL4A4P53420 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL4A4P53420 SPDYE19P-201ENST00000338590 713 ntBASIC17.71■□□□□ 0.42
COL4A4P53420 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL4A4P53420 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.71■□□□□ 0.42
COL4A4P53420 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.71■□□□□ 0.42
COL4A4P53420 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
COL4A4P53420 MIR4492-201ENST00000581627 80 ntBASIC17.71■□□□□ 0.42
COL4A4P53420 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.71■□□□□ 0.42
COL4A4P53420 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.71■□□□□ 0.42
COL4A4P53420 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL4A4P53420 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL4A4P53420 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A4P53420 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A4P53420 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL4A4P53420 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.7■□□□□ 0.42
COL4A4P53420 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A4P53420 KRT8P49-201ENST00000604166 1432 ntBASIC17.7■□□□□ 0.42
COL4A4P53420 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A4P53420 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A4P53420 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
COL4A4P53420 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A4P53420 GNAQP1-201ENST00000444815 1067 ntBASIC17.7■□□□□ 0.42
COL4A4P53420 RNA5SP410-201ENST00000516285 106 ntBASIC17.7■□□□□ 0.42
COL4A4P53420 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.7■□□□□ 0.42
COL4A4P53420 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A4P53420 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A4P53420 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A4P53420 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
COL4A4P53420 CYP2A7P1-201ENST00000595391 815 ntBASIC17.7■□□□□ 0.42
COL4A4P53420 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A4P53420 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A4P53420 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A4P53420 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.7■□□□□ 0.42
COL4A4P53420 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC17.7■□□□□ 0.42
COL4A4P53420 AL035456.1-201ENST00000456064 1369 ntBASIC17.7■□□□□ 0.42
COL4A4P53420 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A4P53420 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
COL4A4P53420 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms