Protein–RNA interactions for Protein: P49450

CENPA, Histone H3-like centromeric protein A, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPAP49450 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CENPAP49450 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CENPAP49450 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
CENPAP49450 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CENPAP49450 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CENPAP49450 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CENPAP49450 FLJ38576-201ENST00000623820 2459 ntBASIC15.33■□□□□ 0.04
CENPAP49450 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CENPAP49450 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CENPAP49450 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CENPAP49450 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.32■□□□□ 0.04
CENPAP49450 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.32■□□□□ 0.04
CENPAP49450 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
CENPAP49450 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
CENPAP49450 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
CENPAP49450 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CENPAP49450 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CENPAP49450 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 NUS1P2-201ENST00000417358 873 ntBASIC15.32■□□□□ 0.04
CENPAP49450 ISCU-203ENST00000431221 799 ntTSL 2 BASIC15.32■□□□□ 0.04
CENPAP49450 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.32■□□□□ 0.04
CENPAP49450 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.32■□□□□ 0.04
CENPAP49450 AC099336.1-202ENST00000602961 463 ntBASIC15.32■□□□□ 0.04
CENPAP49450 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.32■□□□□ 0.04
CENPAP49450 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC15.32■□□□□ 0.04
CENPAP49450 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
CENPAP49450 AC093458.2-201ENST00000623150 629 ntBASIC15.32■□□□□ 0.04
CENPAP49450 AL358472.4-201ENST00000633140 710 ntBASIC15.32■□□□□ 0.04
CENPAP49450 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.32■□□□□ 0.04
CENPAP49450 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CENPAP49450 AL136379.1-201ENST00000623471 2642 ntBASIC15.32■□□□□ 0.04
CENPAP49450 TUBB8P12-201ENST00000308911 1335 ntBASIC15.32■□□□□ 0.04
CENPAP49450 TUBB7P-202ENST00000428444 1305 ntBASIC15.32■□□□□ 0.04
CENPAP49450 TUBB8P7-204ENST00000567960 1332 ntBASIC15.32■□□□□ 0.04
CENPAP49450 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.32■□□□□ 0.04
CENPAP49450 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CENPAP49450 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CENPAP49450 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 AGGF1P2-201ENST00000426656 2106 ntBASIC15.31■□□□□ 0.04
CENPAP49450 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CENPAP49450 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.31■□□□□ 0.04
CENPAP49450 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.31■□□□□ 0.04
CENPAP49450 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 BNIP3P18-201ENST00000593976 575 ntBASIC15.31■□□□□ 0.04
CENPAP49450 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 AC092119.3-201ENST00000612618 583 ntBASIC15.31■□□□□ 0.04
CENPAP49450 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.31■□□□□ 0.04
CENPAP49450 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CENPAP49450 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CENPAP49450 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CENPAP49450 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CENPAP49450 CICP6-201ENST00000457191 2729 ntBASIC15.3■□□□□ 0.04
CENPAP49450 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CENPAP49450 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CENPAP49450 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CENPAP49450 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
CENPAP49450 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CENPAP49450 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CENPAP49450 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms