Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.36■□□□□ 0.21
HNF4AP41235 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
HNF4AP41235 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.36■□□□□ 0.21
HNF4AP41235 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
HNF4AP41235 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
HNF4AP41235 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HNF4AP41235 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HNF4AP41235 AL391256.1-201ENST00000443260 1855 ntBASIC16.35■□□□□ 0.21
HNF4AP41235 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HNF4AP41235 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 AL391005.1-201ENST00000623953 2435 ntBASIC16.35■□□□□ 0.21
HNF4AP41235 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
HNF4AP41235 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HNF4AP41235 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 PTCHD3P3-201ENST00000403073 906 ntBASIC16.35■□□□□ 0.21
HNF4AP41235 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.35■□□□□ 0.21
HNF4AP41235 AC092910.1-201ENST00000482027 1129 ntBASIC16.35■□□□□ 0.21
HNF4AP41235 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.35■□□□□ 0.21
HNF4AP41235 AC105339.3-201ENST00000560043 636 ntBASIC16.35■□□□□ 0.21
HNF4AP41235 AP001005.1-201ENST00000571755 1248 ntBASIC16.35■□□□□ 0.21
HNF4AP41235 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.35■□□□□ 0.21
HNF4AP41235 AC008735.5-201ENST00000623544 497 ntBASIC16.35■□□□□ 0.21
HNF4AP41235 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HNF4AP41235 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.35■□□□□ 0.21
HNF4AP41235 AL805961.1-202ENST00000641562 540 ntBASIC16.35■□□□□ 0.21
HNF4AP41235 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.35■□□□□ 0.21
HNF4AP41235 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.35■□□□□ 0.21
HNF4AP41235 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
HNF4AP41235 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HNF4AP41235 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HNF4AP41235 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.35■□□□□ 0.21
HNF4AP41235 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
HNF4AP41235 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.35■□□□□ 0.21
HNF4AP41235 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HNF4AP41235 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HNF4AP41235 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.34■□□□□ 0.21
HNF4AP41235 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
HNF4AP41235 PI4KAP1-204ENST00000612579 1703 ntBASIC16.34■□□□□ 0.21
HNF4AP41235 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HNF4AP41235 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 AC026396.1-201ENST00000419388 421 ntBASIC16.34■□□□□ 0.21
HNF4AP41235 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.34■□□□□ 0.21
HNF4AP41235 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.34■□□□□ 0.21
HNF4AP41235 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.34■□□□□ 0.21
HNF4AP41235 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.34■□□□□ 0.21
HNF4AP41235 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.34■□□□□ 0.21
HNF4AP41235 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.34■□□□□ 0.21
HNF4AP41235 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
HNF4AP41235 MIR1199-201ENST00000621445 119 ntBASIC16.34■□□□□ 0.21
HNF4AP41235 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.34■□□□□ 0.21
HNF4AP41235 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 TOP3BP1-201ENST00000420768 1380 ntBASIC16.34■□□□□ 0.21
HNF4AP41235 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.34■□□□□ 0.21
HNF4AP41235 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
HNF4AP41235 PCDHA14-201ENST00000506751 2298 ntBASIC16.34■□□□□ 0.21
HNF4AP41235 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.34■□□□□ 0.21
HNF4AP41235 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HNF4AP41235 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms