Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.49■□□□□ 0.23
SHMT2P34897 AC060834.1-201ENST00000443027 2032 ntBASIC16.49■□□□□ 0.23
SHMT2P34897 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.49■□□□□ 0.23
SHMT2P34897 POLD2P1-201ENST00000511220 997 ntBASIC16.49■□□□□ 0.23
SHMT2P34897 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.49■□□□□ 0.23
SHMT2P34897 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.49■□□□□ 0.23
SHMT2P34897 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.49■□□□□ 0.23
SHMT2P34897 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SHMT2P34897 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.49■□□□□ 0.23
SHMT2P34897 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.49■□□□□ 0.23
SHMT2P34897 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SHMT2P34897 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHMT2P34897 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SHMT2P34897 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SHMT2P34897 PMS2P7-201ENST00000506558 1336 ntBASIC16.48■□□□□ 0.23
SHMT2P34897 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SHMT2P34897 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.48■□□□□ 0.23
SHMT2P34897 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SHMT2P34897 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
SHMT2P34897 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.48■□□□□ 0.23
SHMT2P34897 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.48■□□□□ 0.23
SHMT2P34897 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SHMT2P34897 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.48■□□□□ 0.23
SHMT2P34897 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
SHMT2P34897 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.48■□□□□ 0.23
SHMT2P34897 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.48■□□□□ 0.23
SHMT2P34897 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
SHMT2P34897 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.48■□□□□ 0.23
SHMT2P34897 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SHMT2P34897 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.48■□□□□ 0.23
SHMT2P34897 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SHMT2P34897 AL021920.2-201ENST00000624828 1351 ntBASIC16.48■□□□□ 0.23
SHMT2P34897 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.48■□□□□ 0.23
SHMT2P34897 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.48■□□□□ 0.23
SHMT2P34897 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SHMT2P34897 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SHMT2P34897 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SHMT2P34897 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.47■□□□□ 0.23
SHMT2P34897 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SHMT2P34897 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
SHMT2P34897 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
SHMT2P34897 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SHMT2P34897 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.47■□□□□ 0.23
SHMT2P34897 IGLL3P-201ENST00000412472 434 ntBASIC16.47■□□□□ 0.23
SHMT2P34897 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.47■□□□□ 0.23
SHMT2P34897 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.47■□□□□ 0.23
SHMT2P34897 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.47■□□□□ 0.23
SHMT2P34897 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 CXCL1P1-201ENST00000502804 216 ntBASIC16.47■□□□□ 0.23
SHMT2P34897 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.47■□□□□ 0.23
SHMT2P34897 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.47■□□□□ 0.23
SHMT2P34897 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.47■□□□□ 0.23
SHMT2P34897 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SHMT2P34897 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SHMT2P34897 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms