Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
CHRNA3P32297 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CHRNA3P32297 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CHRNA3P32297 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.77■□□□□ 0.44
CHRNA3P32297 AL590627.1-203ENST00000421194 1026 ntBASIC17.77■□□□□ 0.44
CHRNA3P32297 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 AP000347.1-202ENST00000435868 847 ntBASIC17.77■□□□□ 0.44
CHRNA3P32297 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.77■□□□□ 0.44
CHRNA3P32297 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.77■□□□□ 0.44
CHRNA3P32297 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.77■□□□□ 0.44
CHRNA3P32297 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.77■□□□□ 0.44
CHRNA3P32297 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.77■□□□□ 0.44
CHRNA3P32297 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.77■□□□□ 0.44
CHRNA3P32297 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 AL049840.3-201ENST00000602669 611 ntBASIC17.77■□□□□ 0.44
CHRNA3P32297 AC025062.2-201ENST00000605477 670 ntBASIC17.77■□□□□ 0.44
CHRNA3P32297 BX640515.1-201ENST00000617215 977 ntBASIC17.77■□□□□ 0.44
CHRNA3P32297 AC073592.4-201ENST00000623827 446 ntBASIC17.77■□□□□ 0.44
CHRNA3P32297 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
CHRNA3P32297 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHRNA3P32297 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CHRNA3P32297 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHRNA3P32297 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.77■□□□□ 0.43
CHRNA3P32297 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHRNA3P32297 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHRNA3P32297 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.77■□□□□ 0.43
CHRNA3P32297 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.43
CHRNA3P32297 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHRNA3P32297 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHRNA3P32297 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
CHRNA3P32297 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CHRNA3P32297 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CHRNA3P32297 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 PCDHA1-201ENST00000378133 2726 ntBASIC17.76■□□□□ 0.43
CHRNA3P32297 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.76■□□□□ 0.43
CHRNA3P32297 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CHRNA3P32297 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CHRNA3P32297 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.76■□□□□ 0.43
CHRNA3P32297 AL022342.1-201ENST00000400363 863 ntBASIC17.76■□□□□ 0.43
CHRNA3P32297 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 SPDYE21P-201ENST00000413323 827 ntBASIC17.76■□□□□ 0.43
CHRNA3P32297 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.76■□□□□ 0.43
CHRNA3P32297 OR7E14P-202ENST00000530490 1290 ntBASIC17.76■□□□□ 0.43
CHRNA3P32297 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.76■□□□□ 0.43
CHRNA3P32297 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.76■□□□□ 0.43
CHRNA3P32297 AC120114.3-201ENST00000611923 658 ntBASIC17.76■□□□□ 0.43
CHRNA3P32297 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.76■□□□□ 0.43
CHRNA3P32297 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
CHRNA3P32297 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.76■□□□□ 0.43
CHRNA3P32297 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.76■□□□□ 0.43
CHRNA3P32297 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CHRNA3P32297 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 AC132938.5-201ENST00000624980 1813 ntBASIC17.76■□□□□ 0.43
CHRNA3P32297 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
CHRNA3P32297 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
CHRNA3P32297 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.76■□□□□ 0.43
CHRNA3P32297 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.76■□□□□ 0.43
CHRNA3P32297 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHRNA3P32297 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.75■□□□□ 0.43
CHRNA3P32297 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CHRNA3P32297 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CHRNA3P32297 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHRNA3P32297 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHRNA3P32297 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.75■□□□□ 0.43
CHRNA3P32297 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHRNA3P32297 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CHRNA3P32297 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CHRNA3P32297 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CHRNA3P32297 SIGLEC16-201ENST00000599858 1437 ntBASIC17.75■□□□□ 0.43
CHRNA3P32297 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHRNA3P32297 AC022188.1-201ENST00000620960 1664 ntBASIC17.75■□□□□ 0.43
CHRNA3P32297 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.75■□□□□ 0.43
CHRNA3P32297 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHRNA3P32297 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHRNA3P32297 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CHRNA3P32297 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHRNA3P32297 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms