Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SMARCA1P28370 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.21■□□□□ 0.67
SMARCA1P28370 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.21■□□□□ 0.67
SMARCA1P28370 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.21■□□□□ 0.67
SMARCA1P28370 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.21■□□□□ 0.67
SMARCA1P28370 SPDYE11-202ENST00000450699 704 ntBASIC19.21■□□□□ 0.67
SMARCA1P28370 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.21■□□□□ 0.67
SMARCA1P28370 KRT8P48-201ENST00000515599 1220 ntBASIC19.21■□□□□ 0.67
SMARCA1P28370 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.21■□□□□ 0.67
SMARCA1P28370 PRORSD1P-202ENST00000563365 2154 ntBASIC19.21■□□□□ 0.67
SMARCA1P28370 SPDYE9P-201ENST00000570642 692 ntBASIC19.21■□□□□ 0.67
SMARCA1P28370 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.21■□□□□ 0.67
SMARCA1P28370 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 AC012313.1-201ENST00000593393 3059 ntBASIC19.21■□□□□ 0.67
SMARCA1P28370 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.21■□□□□ 0.67
SMARCA1P28370 SPDYE10P-202ENST00000612005 668 ntBASIC19.21■□□□□ 0.67
SMARCA1P28370 SPDYE8P-202ENST00000612377 668 ntBASIC19.21■□□□□ 0.67
SMARCA1P28370 AC079781.4-201ENST00000641908 219 ntBASIC19.21■□□□□ 0.67
SMARCA1P28370 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.21■□□□□ 0.67
SMARCA1P28370 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SMARCA1P28370 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMARCA1P28370 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.2■□□□□ 0.66
SMARCA1P28370 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SMARCA1P28370 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SMARCA1P28370 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.2■□□□□ 0.66
SMARCA1P28370 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SMARCA1P28370 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.2■□□□□ 0.66
SMARCA1P28370 AGGF1P2-201ENST00000426656 2106 ntBASIC19.2■□□□□ 0.66
SMARCA1P28370 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.2■□□□□ 0.66
SMARCA1P28370 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
SMARCA1P28370 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.2■□□□□ 0.66
SMARCA1P28370 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.2■□□□□ 0.66
SMARCA1P28370 KRT8P23-201ENST00000560090 1207 ntBASIC19.2■□□□□ 0.66
SMARCA1P28370 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.2■□□□□ 0.66
SMARCA1P28370 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.2■□□□□ 0.66
SMARCA1P28370 AC022145.2-201ENST00000598203 171 ntBASIC19.2■□□□□ 0.66
SMARCA1P28370 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SMARCA1P28370 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.2■□□□□ 0.66
SMARCA1P28370 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
SMARCA1P28370 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.2■□□□□ 0.66
SMARCA1P28370 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SMARCA1P28370 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMARCA1P28370 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SMARCA1P28370 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.19■□□□□ 0.66
SMARCA1P28370 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.19■□□□□ 0.66
SMARCA1P28370 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 AC079140.1-201ENST00000508039 487 ntBASIC19.19■□□□□ 0.66
SMARCA1P28370 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.19■□□□□ 0.66
SMARCA1P28370 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 AC073389.1-201ENST00000595595 795 ntBASIC19.19■□□□□ 0.66
SMARCA1P28370 AC008267.7-201ENST00000624570 1194 ntBASIC19.19■□□□□ 0.66
SMARCA1P28370 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SMARCA1P28370 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 GGT3P-204ENST00000453783 1664 ntBASIC19.19■□□□□ 0.66
SMARCA1P28370 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.19■□□□□ 0.66
SMARCA1P28370 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SMARCA1P28370 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SMARCA1P28370 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.19■□□□□ 0.66
SMARCA1P28370 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.19■□□□□ 0.66
SMARCA1P28370 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMARCA1P28370 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.19■□□□□ 0.66
SMARCA1P28370 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 HTR7P1-202ENST00000624664 4411 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms