Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
VCANP13611 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.14■□□□□ 0.34
VCANP13611 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
VCANP13611 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC17.14■□□□□ 0.33
VCANP13611 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC17.14■□□□□ 0.33
VCANP13611 AC004898.1-201ENST00000451057 766 ntBASIC17.14■□□□□ 0.33
VCANP13611 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.14■□□□□ 0.33
VCANP13611 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC17.14■□□□□ 0.33
VCANP13611 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.14■□□□□ 0.33
VCANP13611 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.14■□□□□ 0.33
VCANP13611 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
VCANP13611 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.14■□□□□ 0.33
VCANP13611 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.14■□□□□ 0.33
VCANP13611 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.14■□□□□ 0.33
VCANP13611 AL607033.1-201ENST00000623900 1599 ntBASIC17.14■□□□□ 0.33
VCANP13611 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.14■□□□□ 0.33
VCANP13611 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.14■□□□□ 0.33
VCANP13611 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.14■□□□□ 0.33
VCANP13611 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.14■□□□□ 0.33
VCANP13611 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC17.14■□□□□ 0.33
VCANP13611 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.14■□□□□ 0.33
VCANP13611 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.14■□□□□ 0.33
VCANP13611 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCANP13611 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.14■□□□□ 0.33
VCANP13611 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.14■□□□□ 0.33
VCANP13611 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.14■□□□□ 0.33
VCANP13611 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.14■□□□□ 0.33
VCANP13611 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
VCANP13611 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
VCANP13611 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.14■□□□□ 0.33
VCANP13611 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.13■□□□□ 0.33
VCANP13611 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VCANP13611 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.13■□□□□ 0.33
VCANP13611 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC17.13■□□□□ 0.33
VCANP13611 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.13■□□□□ 0.33
VCANP13611 AP003419.4-201ENST00000616071 517 ntBASIC17.13■□□□□ 0.33
VCANP13611 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.13■□□□□ 0.33
VCANP13611 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.13■□□□□ 0.33
VCANP13611 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCANP13611 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.13■□□□□ 0.33
VCANP13611 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 YBX1P6-201ENST00000442962 1002 ntBASIC17.12■□□□□ 0.33
VCANP13611 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
VCANP13611 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC17.12■□□□□ 0.33
VCANP13611 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.12■□□□□ 0.33
VCANP13611 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
VCANP13611 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VCANP13611 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 REXO1L9P-201ENST00000604264 2108 ntBASIC17.12■□□□□ 0.33
VCANP13611 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 AC046185.3-201ENST00000623228 1824 ntBASIC17.12■□□□□ 0.33
VCANP13611 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.12■□□□□ 0.33
VCANP13611 AC097724.1-201ENST00000609581 426 ntBASIC17.12■□□□□ 0.33
VCANP13611 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 BX276092.7-203ENST00000637198 1536 ntBASIC17.12■□□□□ 0.33
VCANP13611 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VCANP13611 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.12■□□□□ 0.33
VCANP13611 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCANP13611 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.12■□□□□ 0.33
VCANP13611 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.12■□□□□ 0.33
VCANP13611 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC17.12■□□□□ 0.33
VCANP13611 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC17.12■□□□□ 0.33
VCANP13611 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.12■□□□□ 0.33
VCANP13611 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.12■□□□□ 0.33
VCANP13611 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms