Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
CXCL1P09341 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.09□□□□□ -0.31
CXCL1P09341 CCR12P-201ENST00000446203 998 ntBASIC13.09□□□□□ -0.31
CXCL1P09341 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC13.09□□□□□ -0.31
CXCL1P09341 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 BX088651.1-201ENST00000540551 451 ntBASIC13.09□□□□□ -0.31
CXCL1P09341 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 LINC00528-201ENST00000600723 2160 ntBASIC13.09□□□□□ -0.31
CXCL1P09341 AP001412.1-201ENST00000608405 714 ntBASIC13.09□□□□□ -0.31
CXCL1P09341 MMD2-204ENST00000612910 778 ntTSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 AL391807.1-203ENST00000604392 2365 ntBASIC13.09□□□□□ -0.31
CXCL1P09341 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.08□□□□□ -0.31
CXCL1P09341 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
CXCL1P09341 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.08□□□□□ -0.31
CXCL1P09341 AC006486.2-201ENST00000624246 2199 ntBASIC13.08□□□□□ -0.31
CXCL1P09341 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
CXCL1P09341 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
CXCL1P09341 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.08□□□□□ -0.31
CXCL1P09341 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 HARS-204ENST00000438307 1789 ntTSL 2 BASIC13.08□□□□□ -0.32
CXCL1P09341 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC13.08□□□□□ -0.32
CXCL1P09341 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC13.08□□□□□ -0.32
CXCL1P09341 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC13.08□□□□□ -0.32
CXCL1P09341 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC13.08□□□□□ -0.32
CXCL1P09341 AC090192.1-201ENST00000517740 490 ntBASIC13.08□□□□□ -0.32
CXCL1P09341 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC13.08□□□□□ -0.32
CXCL1P09341 IRX5-204ENST00000560154 879 ntTSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 DECR2-212ENST00000627716 352 ntTSL 2 BASIC13.08□□□□□ -0.32
CXCL1P09341 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.08□□□□□ -0.32
CXCL1P09341 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.08□□□□□ -0.32
CXCL1P09341 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CXCL1P09341 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 MED29-202ENST00000594368 1471 ntTSL 2 BASIC13.08□□□□□ -0.32
CXCL1P09341 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CXCL1P09341 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CXCL1P09341 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.08□□□□□ -0.32
CXCL1P09341 AC007191.1-201ENST00000623179 2995 ntBASIC13.08□□□□□ -0.32
CXCL1P09341 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.07□□□□□ -0.32
CXCL1P09341 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CXCL1P09341 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CXCL1P09341 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC13.07□□□□□ -0.32
CXCL1P09341 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms