Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.63■□□□□ 0.41
APOEP02649 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
APOEP02649 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
APOEP02649 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.63■□□□□ 0.41
APOEP02649 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 AL139384.1-201ENST00000612143 3047 ntBASIC17.63■□□□□ 0.41
APOEP02649 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
APOEP02649 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.63■□□□□ 0.41
APOEP02649 IGLL3P-201ENST00000412472 434 ntBASIC17.63■□□□□ 0.41
APOEP02649 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.63■□□□□ 0.41
APOEP02649 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
APOEP02649 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.63■□□□□ 0.41
APOEP02649 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.63■□□□□ 0.41
APOEP02649 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.63■□□□□ 0.41
APOEP02649 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.63■□□□□ 0.41
APOEP02649 AC010507.1-201ENST00000633895 436 ntBASIC17.63■□□□□ 0.41
APOEP02649 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.63■□□□□ 0.41
APOEP02649 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.63■□□□□ 0.41
APOEP02649 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
APOEP02649 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.63■□□□□ 0.41
APOEP02649 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.63■□□□□ 0.41
APOEP02649 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.63■□□□□ 0.41
APOEP02649 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
APOEP02649 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
APOEP02649 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.62■□□□□ 0.41
APOEP02649 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.62■□□□□ 0.41
APOEP02649 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.62■□□□□ 0.41
APOEP02649 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.62■□□□□ 0.41
APOEP02649 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.62■□□□□ 0.41
APOEP02649 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
APOEP02649 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.62■□□□□ 0.41
APOEP02649 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.62■□□□□ 0.41
APOEP02649 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.62■□□□□ 0.41
APOEP02649 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.62■□□□□ 0.41
APOEP02649 AC096734.2-201ENST00000562054 433 ntBASIC17.62■□□□□ 0.41
APOEP02649 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
APOEP02649 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 AC092053.1-201ENST00000605787 1936 ntBASIC17.62■□□□□ 0.41
APOEP02649 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.62■□□□□ 0.41
APOEP02649 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
APOEP02649 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOEP02649 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
APOEP02649 AC105020.1-201ENST00000435356 2205 ntBASIC17.62■□□□□ 0.41
APOEP02649 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.61■□□□□ 0.41
APOEP02649 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.61■□□□□ 0.41
APOEP02649 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
APOEP02649 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 AC005915.1-201ENST00000624912 2018 ntBASIC17.61■□□□□ 0.41
APOEP02649 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.61■□□□□ 0.41
APOEP02649 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
APOEP02649 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.61■□□□□ 0.41
APOEP02649 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.61■□□□□ 0.41
APOEP02649 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.61■□□□□ 0.41
APOEP02649 AC107918.2-201ENST00000530817 355 ntBASIC17.61■□□□□ 0.41
APOEP02649 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.61■□□□□ 0.41
APOEP02649 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.61■□□□□ 0.41
APOEP02649 AC040169.1-201ENST00000565382 521 ntBASIC17.61■□□□□ 0.41
APOEP02649 AC018845.2-201ENST00000568326 409 ntBASIC17.61■□□□□ 0.41
APOEP02649 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.61■□□□□ 0.41
APOEP02649 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.61■□□□□ 0.41
APOEP02649 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
APOEP02649 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms