Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.14■□□□□ 0.17
GFRA3O60609 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.14■□□□□ 0.17
GFRA3O60609 HLA-C-210ENST00000640219 976 ntBASIC16.14■□□□□ 0.17
GFRA3O60609 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.14■□□□□ 0.17
GFRA3O60609 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
GFRA3O60609 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.14■□□□□ 0.17
GFRA3O60609 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.14■□□□□ 0.17
GFRA3O60609 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.14■□□□□ 0.17
GFRA3O60609 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
GFRA3O60609 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
GFRA3O60609 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
GFRA3O60609 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 KRT8P12-202ENST00000472924 1397 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
GFRA3O60609 LINC00896-202ENST00000609602 2128 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
GFRA3O60609 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
GFRA3O60609 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.13■□□□□ 0.17
GFRA3O60609 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
GFRA3O60609 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 AC091046.1-201ENST00000331871 207 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
GFRA3O60609 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC16.13■□□□□ 0.17
GFRA3O60609 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.13■□□□□ 0.17
GFRA3O60609 AL355864.2-201ENST00000447420 863 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
GFRA3O60609 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.13■□□□□ 0.17
GFRA3O60609 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 RN7SL818P-201ENST00000485099 259 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.13■□□□□ 0.17
GFRA3O60609 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.13■□□□□ 0.17
GFRA3O60609 RN7SL718P-201ENST00000581254 303 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 MIR4492-201ENST00000581627 80 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.13■□□□□ 0.17
GFRA3O60609 RN7SL725P-201ENST00000606439 259 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 MIR6069-201ENST00000620069 79 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 AL020996.1-203ENST00000536896 2307 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.13■□□□□ 0.17
GFRA3O60609 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.13■□□□□ 0.17
GFRA3O60609 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
GFRA3O60609 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.13■□□□□ 0.17
GFRA3O60609 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GFRA3O60609 AC087289.5-201ENST00000586076 3175 ntBASIC16.12■□□□□ 0.17
GFRA3O60609 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
GFRA3O60609 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
GFRA3O60609 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.12■□□□□ 0.17
GFRA3O60609 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC16.12■□□□□ 0.17
GFRA3O60609 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC16.12■□□□□ 0.17
GFRA3O60609 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.12■□□□□ 0.17
GFRA3O60609 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.12■□□□□ 0.17
GFRA3O60609 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.12■□□□□ 0.17
GFRA3O60609 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.12■□□□□ 0.17
GFRA3O60609 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
GFRA3O60609 PTP4A1P2-201ENST00000546033 454 ntBASIC16.12■□□□□ 0.17
GFRA3O60609 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.12■□□□□ 0.17
GFRA3O60609 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.12■□□□□ 0.17
GFRA3O60609 AC020914.3-201ENST00000594712 304 ntBASIC16.12■□□□□ 0.17
GFRA3O60609 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.12■□□□□ 0.17
GFRA3O60609 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.12■□□□□ 0.17
GFRA3O60609 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.12■□□□□ 0.17
GFRA3O60609 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.12■□□□□ 0.17
GFRA3O60609 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.12■□□□□ 0.17
GFRA3O60609 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
GFRA3O60609 RNF165-205ENST00000588679 2904 ntBASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms