Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 AC124067.4-201ENST00000519691 2379 ntBASIC18.36■□□□□ 0.53
CLDN3O15551 AP002490.2-201ENST00000524791 560 ntBASIC18.36■□□□□ 0.53
CLDN3O15551 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.36■□□□□ 0.53
CLDN3O15551 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CLDN3O15551 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.36■□□□□ 0.53
CLDN3O15551 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CLDN3O15551 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.36■□□□□ 0.53
CLDN3O15551 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLDN3O15551 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CLDN3O15551 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CLDN3O15551 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN3O15551 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 AC092919.2-201ENST00000623631 1645 ntBASIC18.35■□□□□ 0.53
CLDN3O15551 AC006277.1-201ENST00000624348 1610 ntBASIC18.35■□□□□ 0.53
CLDN3O15551 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN3O15551 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 AC140658.5-201ENST00000438532 169 ntBASIC18.35■□□□□ 0.53
CLDN3O15551 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN3O15551 AC005829.1-201ENST00000570002 483 ntBASIC18.35■□□□□ 0.53
CLDN3O15551 AP002472.1-201ENST00000577490 586 ntBASIC18.35■□□□□ 0.53
CLDN3O15551 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN3O15551 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
CLDN3O15551 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
CLDN3O15551 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLDN3O15551 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN3O15551 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLDN3O15551 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.35■□□□□ 0.53
CLDN3O15551 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLDN3O15551 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.34■□□□□ 0.53
CLDN3O15551 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.34■□□□□ 0.53
CLDN3O15551 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.34■□□□□ 0.53
CLDN3O15551 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.34■□□□□ 0.53
CLDN3O15551 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.34■□□□□ 0.53
CLDN3O15551 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.34■□□□□ 0.53
CLDN3O15551 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.34■□□□□ 0.53
CLDN3O15551 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.34■□□□□ 0.53
CLDN3O15551 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.34■□□□□ 0.53
CLDN3O15551 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.34■□□□□ 0.53
CLDN3O15551 CYP2A7P1-201ENST00000595391 815 ntBASIC18.34■□□□□ 0.53
CLDN3O15551 AC013467.2-201ENST00000605472 835 ntBASIC18.34■□□□□ 0.53
CLDN3O15551 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.34■□□□□ 0.53
CLDN3O15551 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 LINC00895-201ENST00000629028 1637 ntBASIC18.34■□□□□ 0.53
CLDN3O15551 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.34■□□□□ 0.53
CLDN3O15551 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
CLDN3O15551 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLDN3O15551 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.53
CLDN3O15551 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN3O15551 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN3O15551 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN3O15551 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CLDN3O15551 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.33■□□□□ 0.53
CLDN3O15551 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN3O15551 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN3O15551 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN3O15551 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN3O15551 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN3O15551 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLDN3O15551 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
CLDN3O15551 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 AL645728.1-201ENST00000366221 2101 ntBASIC18.33■□□□□ 0.52
CLDN3O15551 MIR1233-2-201ENST00000408138 82 ntBASIC18.33■□□□□ 0.52
CLDN3O15551 MIR1233-1-201ENST00000408722 82 ntBASIC18.33■□□□□ 0.52
CLDN3O15551 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.33■□□□□ 0.52
CLDN3O15551 HTR5BP-201ENST00000430851 1154 ntBASIC18.33■□□□□ 0.52
CLDN3O15551 MKNK2P1-201ENST00000437526 628 ntBASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms