Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA1Q9Y5H4 ABALON-201ENST00000629058 1903 ntBASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 AL138918.1-201ENST00000568306 659 ntBASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA1Q9Y5H4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 KRT18P34-201ENST00000488218 1270 ntBASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 TP53TG3HP-202ENST00000569755 579 ntBASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 AC131009.4-201ENST00000624048 1740 ntBASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA1Q9Y5H4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms