Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 BX005266.1-201ENST00000473402 457 ntBASIC13.65□□□□□ -0.22
FOXA2Q9Y261 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 BANP-204ENST00000393208 2283 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AL391005.1-201ENST00000623953 2435 ntBASIC13.64□□□□□ -0.23
FOXA2Q9Y261 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AP002414.1-201ENST00000391405 1147 ntBASIC13.64□□□□□ -0.23
FOXA2Q9Y261 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AC073648.2-201ENST00000510116 352 ntBASIC13.64□□□□□ -0.23
FOXA2Q9Y261 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 NKAPP1-205ENST00000585790 367 ntBASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 AL513523.2-202ENST00000427283 2040 ntBASIC13.64□□□□□ -0.23
FOXA2Q9Y261 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 PCDH8P1-201ENST00000428983 2773 ntBASIC13.64□□□□□ -0.23
FOXA2Q9Y261 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA2Q9Y261 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 AC097637.2-201ENST00000624096 1997 ntBASIC13.63□□□□□ -0.23
FOXA2Q9Y261 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 FOS-208ENST00000555686 1496 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA2Q9Y261 PRYP5-201ENST00000451909 266 ntBASIC13.63□□□□□ -0.23
FOXA2Q9Y261 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms