Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SNX33P1-201ENST00000592116 1762 ntBASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SMC4Q9NTJ3 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 AC007967.2-201ENST00000432613 625 ntBASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 CYP2A7P1-201ENST00000595391 815 ntBASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 AC010507.1-201ENST00000633895 436 ntBASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC21.58■■□□□ 1.05
SMC4Q9NTJ3 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC21.58■■□□□ 1.04
SMC4Q9NTJ3 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMC4Q9NTJ3 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC21.58■■□□□ 1.04
SMC4Q9NTJ3 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 CRCP-205ENST00000431089 942 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 NME4-212ENST00000621774 904 ntTSL 3 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
SMC4Q9NTJ3 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 LBH-204ENST00000406087 559 ntTSL 4 BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SMC4Q9NTJ3 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms