Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 AC092865.5-201ENST00000545435 363 ntBASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 KRT19P2-202ENST00000557173 1012 ntBASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 DUX4L17-201ENST00000557360 1267 ntBASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 AC005412.3-201ENST00000580309 715 ntBASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 TUBB8P12-201ENST00000308911 1335 ntBASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 TUBB7P-202ENST00000428444 1305 ntBASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 TUBB8P7-204ENST00000567960 1332 ntBASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.88■□□□□ 0.13
PTCHD1Q96NR3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 NKILA-202ENST00000614771 2598 ntBASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 AC011676.5-201ENST00000624864 2660 ntBASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 AL353732.1-201ENST00000569618 1459 ntBASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 BX842568.4-201ENST00000421222 227 ntBASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
PTCHD1Q96NR3 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 AC004832.2-201ENST00000426397 482 ntBASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 MTDHP5-201ENST00000598980 586 ntBASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 AL121761.2-201ENST00000598007 1648 ntBASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms