Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 HCG4B-203ENST00000450128 991 ntBASIC20.33■□□□□ 0.85
VPS53Q5VIR6 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 AC010654.1-201ENST00000615722 808 ntBASIC20.33■□□□□ 0.85
VPS53Q5VIR6 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
VPS53Q5VIR6 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 PCDHA14-201ENST00000506751 2298 ntBASIC20.33■□□□□ 0.84
VPS53Q5VIR6 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
VPS53Q5VIR6 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 MIR574-201ENST00000385209 96 ntBASIC20.32■□□□□ 0.84
VPS53Q5VIR6 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 PRSS29P-201ENST00000440800 595 ntBASIC20.32■□□□□ 0.84
VPS53Q5VIR6 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 AC140113.2-201ENST00000604370 208 ntBASIC20.32■□□□□ 0.84
VPS53Q5VIR6 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS53Q5VIR6 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 AC064836.3-201ENST00000607928 673 ntBASIC20.31■□□□□ 0.84
VPS53Q5VIR6 ACTL9-202ENST00000612068 1252 ntBASIC20.31■□□□□ 0.84
VPS53Q5VIR6 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS53Q5VIR6 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms