Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 PCDHB17P-201ENST00000539533 2393 ntBASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 FAM86MP-201ENST00000340703 885 ntBASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 MPV17-208ENST00000405076 603 ntTSL 5 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 AC022210.1-201ENST00000449856 793 ntBASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 AL512343.1-201ENST00000605837 169 ntBASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 CROCCP4-201ENST00000457096 498 ntBASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 KRT18P34-201ENST00000488218 1270 ntBASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 AC016396.2-201ENST00000562575 1417 ntBASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13DQ5THJ4 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AL139099.5-201ENST00000635274 300 ntBASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AL031731.1-201ENST00000642131 2094 ntBASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AC092658.1-201ENST00000505836 891 ntBASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AL021920.2-201ENST00000624828 1351 ntBASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 HLA-H-201ENST00000383620 1096 ntBASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 RPL28-206ENST00000558752 671 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AC018665.1-201ENST00000622927 1362 ntBASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AC092068.3-201ENST00000587894 2016 ntBASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 REXO1L6P-201ENST00000603433 1515 ntBASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 AC055876.2-201ENST00000531834 546 ntBASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 MAX-210ENST00000555419 765 ntTSL 5 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC11.12□□□□□ -0.63
VPS13DQ5THJ4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
VPS13DQ5THJ4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms