Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTCHD3Q3KNS1 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 AC092171.3-201ENST00000610122 2651 ntBASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 KRT8P49-201ENST00000604166 1432 ntBASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 AL591424.1-201ENST00000442569 1213 ntBASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 AC139530.3-201ENST00000620344 690 ntBASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 PGM5P2-202ENST00000637225 1043 ntBASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.48■□□□□ 0.23
PTCHD3Q3KNS1 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 AC087163.2-201ENST00000457299 853 ntBASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 RPS15P9-201ENST00000494093 319 ntBASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.47■□□□□ 0.23
PTCHD3Q3KNS1 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 AL391256.1-201ENST00000443260 1855 ntBASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 MIR1233-2-201ENST00000408138 82 ntBASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 MIR1233-1-201ENST00000408722 82 ntBASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 RNA5SP416-201ENST00000516838 111 ntBASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms