Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGCS2P54868 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HMGCS2P54868 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGCS2P54868 AL353705.2-201ENST00000428243 662 ntBASIC19.29■□□□□ 0.68
HMGCS2P54868 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.29■□□□□ 0.68
HMGCS2P54868 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGCS2P54868 AL596325.1-201ENST00000563991 1082 ntBASIC19.29■□□□□ 0.68
HMGCS2P54868 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.29■□□□□ 0.68
HMGCS2P54868 SPTSSB-204ENST00000617024 1292 ntBASIC19.29■□□□□ 0.68
HMGCS2P54868 AL358472.5-202ENST00000641448 1267 ntBASIC19.29■□□□□ 0.68
HMGCS2P54868 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGCS2P54868 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.29■□□□□ 0.68
HMGCS2P54868 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGCS2P54868 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGCS2P54868 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGCS2P54868 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGCS2P54868 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGCS2P54868 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
HMGCS2P54868 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HMGCS2P54868 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGCS2P54868 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HMGCS2P54868 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
HMGCS2P54868 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HMGCS2P54868 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
HMGCS2P54868 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 MTND6P24-201ENST00000440466 518 ntBASIC19.28■□□□□ 0.68
HMGCS2P54868 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 AC009477.1-201ENST00000452936 217 ntBASIC19.28■□□□□ 0.68
HMGCS2P54868 RN7SL692P-201ENST00000464677 288 ntBASIC19.28■□□□□ 0.68
HMGCS2P54868 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC19.28■□□□□ 0.68
HMGCS2P54868 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HMGCS2P54868 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.28■□□□□ 0.68
HMGCS2P54868 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 AL035456.1-201ENST00000456064 1369 ntBASIC19.28■□□□□ 0.68
HMGCS2P54868 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGCS2P54868 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGCS2P54868 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.27■□□□□ 0.68
HMGCS2P54868 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGCS2P54868 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGCS2P54868 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC19.27■□□□□ 0.68
HMGCS2P54868 FAM220BP-201ENST00000377689 816 ntBASIC19.27■□□□□ 0.68
HMGCS2P54868 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGCS2P54868 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 REEP4-207ENST00000523293 913 ntTSL 3 BASIC19.27■□□□□ 0.68
HMGCS2P54868 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGCS2P54868 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC19.27■□□□□ 0.68
HMGCS2P54868 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGCS2P54868 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGCS2P54868 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGCS2P54868 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19.27■□□□□ 0.68
HMGCS2P54868 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.27■□□□□ 0.68
HMGCS2P54868 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 TEX28P1-201ENST00000613479 1221 ntBASIC19.27■□□□□ 0.68
HMGCS2P54868 TEX28P2-201ENST00000617764 1221 ntBASIC19.27■□□□□ 0.68
HMGCS2P54868 SRP9-204ENST00000619790 377 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGCS2P54868 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
HMGCS2P54868 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGCS2P54868 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGCS2P54868 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
HMGCS2P54868 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGCS2P54868 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.27■□□□□ 0.67
HMGCS2P54868 TUBB8P12-201ENST00000308911 1335 ntBASIC19.26■□□□□ 0.67
HMGCS2P54868 TUBB7P-202ENST00000428444 1305 ntBASIC19.26■□□□□ 0.67
HMGCS2P54868 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms