Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.43■□□□□ 0.06
RFC3P40938 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
RFC3P40938 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.43■□□□□ 0.06
RFC3P40938 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
RFC3P40938 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
RFC3P40938 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.43■□□□□ 0.06
RFC3P40938 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.43■□□□□ 0.06
RFC3P40938 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.43■□□□□ 0.06
RFC3P40938 AC027612.4-201ENST00000605371 583 ntBASIC15.43■□□□□ 0.06
RFC3P40938 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
RFC3P40938 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.43■□□□□ 0.06
RFC3P40938 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFC3P40938 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.43■□□□□ 0.06
RFC3P40938 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.43■□□□□ 0.06
RFC3P40938 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
RFC3P40938 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
RFC3P40938 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.42■□□□□ 0.06
RFC3P40938 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
RFC3P40938 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.42■□□□□ 0.06
RFC3P40938 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 SLC25A1P3-201ENST00000395415 828 ntBASIC15.42■□□□□ 0.06
RFC3P40938 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.42■□□□□ 0.06
RFC3P40938 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.42■□□□□ 0.06
RFC3P40938 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
RFC3P40938 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.42■□□□□ 0.06
RFC3P40938 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.42■□□□□ 0.06
RFC3P40938 AL355385.1-201ENST00000606123 409 ntBASIC15.42■□□□□ 0.06
RFC3P40938 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.42■□□□□ 0.06
RFC3P40938 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.42■□□□□ 0.06
RFC3P40938 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.42■□□□□ 0.06
RFC3P40938 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
RFC3P40938 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.42■□□□□ 0.06
RFC3P40938 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.42■□□□□ 0.06
RFC3P40938 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
RFC3P40938 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFC3P40938 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
RFC3P40938 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.41■□□□□ 0.06
RFC3P40938 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 PP12613-201ENST00000424958 2230 ntBASIC15.41■□□□□ 0.06
RFC3P40938 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
RFC3P40938 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.41■□□□□ 0.06
RFC3P40938 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFC3P40938 TIMM8BP1-201ENST00000452384 211 ntBASIC15.41■□□□□ 0.06
RFC3P40938 AC112191.1-201ENST00000523689 701 ntBASIC15.41■□□□□ 0.06
RFC3P40938 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
RFC3P40938 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.41■□□□□ 0.06
RFC3P40938 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.41■□□□□ 0.06
RFC3P40938 REXO1L3P-201ENST00000622202 1288 ntBASIC15.41■□□□□ 0.06
RFC3P40938 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.41■□□□□ 0.06
RFC3P40938 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms