Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
RFC4P35249 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.96■□□□□ 0.95
RFC4P35249 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 AC112492.5-201ENST00000421897 457 ntBASIC20.96■□□□□ 0.95
RFC4P35249 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.96■□□□□ 0.95
RFC4P35249 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.96■□□□□ 0.95
RFC4P35249 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.96■□□□□ 0.95
RFC4P35249 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RFC4P35249 WASH4P-201ENST00000564273 1246 ntBASIC20.96■□□□□ 0.95
RFC4P35249 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.96■□□□□ 0.95
RFC4P35249 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.96■□□□□ 0.95
RFC4P35249 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.96■□□□□ 0.95
RFC4P35249 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC20.96■□□□□ 0.95
RFC4P35249 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.95
RFC4P35249 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
RFC4P35249 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
RFC4P35249 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 AC108860.2-201ENST00000562760 2183 ntBASIC20.95■□□□□ 0.94
RFC4P35249 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.95■□□□□ 0.94
RFC4P35249 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
RFC4P35249 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 MIR658-201ENST00000385210 100 ntBASIC20.95■□□□□ 0.94
RFC4P35249 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.95■□□□□ 0.94
RFC4P35249 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.95■□□□□ 0.94
RFC4P35249 RAB43P1-201ENST00000561790 589 ntBASIC20.95■□□□□ 0.94
RFC4P35249 AC106886.1-201ENST00000568660 600 ntBASIC20.95■□□□□ 0.94
RFC4P35249 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.95■□□□□ 0.94
RFC4P35249 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.95■□□□□ 0.94
RFC4P35249 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.95■□□□□ 0.94
RFC4P35249 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.95■□□□□ 0.94
RFC4P35249 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC20.95■□□□□ 0.94
RFC4P35249 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RFC4P35249 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.95■□□□□ 0.94
RFC4P35249 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.94■□□□□ 0.94
RFC4P35249 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFC4P35249 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
RFC4P35249 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
RFC4P35249 AL023806.1-201ENST00000603994 1649 ntBASIC20.94■□□□□ 0.94
RFC4P35249 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RFC4P35249 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFC4P35249 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.94■□□□□ 0.94
RFC4P35249 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.94■□□□□ 0.94
RFC4P35249 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.94■□□□□ 0.94
RFC4P35249 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RFC4P35249 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.94■□□□□ 0.94
RFC4P35249 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.94■□□□□ 0.94
RFC4P35249 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.94■□□□□ 0.94
RFC4P35249 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.94■□□□□ 0.94
RFC4P35249 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.94■□□□□ 0.94
RFC4P35249 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.94■□□□□ 0.94
RFC4P35249 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.94■□□□□ 0.94
RFC4P35249 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.94■□□□□ 0.94
RFC4P35249 AC004790.1-201ENST00000612686 536 ntBASIC20.94■□□□□ 0.94
RFC4P35249 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
RFC4P35249 AC007431.3-201ENST00000623221 587 ntBASIC20.94■□□□□ 0.94
RFC4P35249 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RFC4P35249 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFC4P35249 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.94■□□□□ 0.94
RFC4P35249 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFC4P35249 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RFC4P35249 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RFC4P35249 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.93■□□□□ 0.94
RFC4P35249 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.93■□□□□ 0.94
RFC4P35249 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.93■□□□□ 0.94
RFC4P35249 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RFC4P35249 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
RFC4P35249 AL512361.1-201ENST00000554200 418 ntBASIC20.93■□□□□ 0.94
RFC4P35249 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
RFC4P35249 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
RFC4P35249 AC044860.1-202ENST00000559481 777 ntBASIC20.93■□□□□ 0.94
RFC4P35249 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC20.93■□□□□ 0.94
RFC4P35249 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
RFC4P35249 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RFC4P35249 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
RFC4P35249 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms