Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 MTDHP3-201ENST00000594186 672 ntBASIC19.44■□□□□ 0.7
LIG1P18858 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.44■□□□□ 0.7
LIG1P18858 AC073592.5-201ENST00000624854 528 ntBASIC19.44■□□□□ 0.7
LIG1P18858 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIG1P18858 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIG1P18858 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIG1P18858 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIG1P18858 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIG1P18858 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.44■□□□□ 0.7
LIG1P18858 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.44■□□□□ 0.7
LIG1P18858 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIG1P18858 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIG1P18858 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIG1P18858 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.43■□□□□ 0.7
LIG1P18858 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
LIG1P18858 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.43■□□□□ 0.7
LIG1P18858 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
LIG1P18858 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.43■□□□□ 0.7
LIG1P18858 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.43■□□□□ 0.7
LIG1P18858 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.43■□□□□ 0.7
LIG1P18858 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.43■□□□□ 0.7
LIG1P18858 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.43■□□□□ 0.7
LIG1P18858 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.43■□□□□ 0.7
LIG1P18858 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
LIG1P18858 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.43■□□□□ 0.7
LIG1P18858 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
LIG1P18858 AL121912.1-201ENST00000603683 238 ntBASIC19.43■□□□□ 0.7
LIG1P18858 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.43■□□□□ 0.7
LIG1P18858 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LIG1P18858 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.43■□□□□ 0.7
LIG1P18858 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG1P18858 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LIG1P18858 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
LIG1P18858 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG1P18858 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG1P18858 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 AC005052.1-201ENST00000625181 2492 ntBASIC19.42■□□□□ 0.7
LIG1P18858 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.42■□□□□ 0.7
LIG1P18858 ABCD1P5-201ENST00000445663 754 ntBASIC19.42■□□□□ 0.7
LIG1P18858 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.42■□□□□ 0.7
LIG1P18858 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG1P18858 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 AC148477.5-201ENST00000625164 1645 ntBASIC19.42■□□□□ 0.7
LIG1P18858 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
LIG1P18858 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG1P18858 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
LIG1P18858 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG1P18858 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG1P18858 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG1P18858 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
LIG1P18858 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG1P18858 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.41■□□□□ 0.7
LIG1P18858 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
LIG1P18858 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LIG1P18858 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.41■□□□□ 0.7
LIG1P18858 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms