Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.39■□□□□ 0.21
TNFP01375 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.39■□□□□ 0.21
TNFP01375 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.39■□□□□ 0.21
TNFP01375 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.39■□□□□ 0.21
TNFP01375 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.39■□□□□ 0.21
TNFP01375 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.39■□□□□ 0.21
TNFP01375 KRT18P34-201ENST00000488218 1270 ntBASIC16.39■□□□□ 0.21
TNFP01375 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.39■□□□□ 0.21
TNFP01375 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.39■□□□□ 0.21
TNFP01375 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.39■□□□□ 0.21
TNFP01375 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.39■□□□□ 0.21
TNFP01375 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.39■□□□□ 0.21
TNFP01375 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.39■□□□□ 0.21
TNFP01375 AC093512.1-201ENST00000617969 520 ntBASIC16.39■□□□□ 0.21
TNFP01375 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
TNFP01375 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TNFP01375 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TNFP01375 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 PP12613-201ENST00000424958 2230 ntBASIC16.38■□□□□ 0.21
TNFP01375 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 AC006277.1-201ENST00000624348 1610 ntBASIC16.38■□□□□ 0.21
TNFP01375 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TNFP01375 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TNFP01375 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.38■□□□□ 0.21
TNFP01375 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.38■□□□□ 0.21
TNFP01375 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.38■□□□□ 0.21
TNFP01375 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 AC013467.2-201ENST00000605472 835 ntBASIC16.38■□□□□ 0.21
TNFP01375 AP001059.3-201ENST00000619053 235 ntBASIC16.38■□□□□ 0.21
TNFP01375 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
TNFP01375 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
TNFP01375 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TNFP01375 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TNFP01375 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TNFP01375 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
TNFP01375 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.37■□□□□ 0.21
TNFP01375 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.37■□□□□ 0.21
TNFP01375 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
TNFP01375 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TNFP01375 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.37■□□□□ 0.21
TNFP01375 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 CNN2P2-201ENST00000443536 909 ntBASIC16.37■□□□□ 0.21
TNFP01375 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TNFP01375 CNN2P3-201ENST00000450201 906 ntBASIC16.37■□□□□ 0.21
TNFP01375 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.37■□□□□ 0.21
TNFP01375 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TNFP01375 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.37■□□□□ 0.21
TNFP01375 AL512356.2-201ENST00000546955 174 ntBASIC16.37■□□□□ 0.21
TNFP01375 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.37■□□□□ 0.21
TNFP01375 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 AL136317.3-201ENST00000618497 906 ntBASIC16.37■□□□□ 0.21
TNFP01375 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.37■□□□□ 0.21
TNFP01375 Z92544.3-201ENST00000624747 417 ntBASIC16.37■□□□□ 0.21
TNFP01375 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.37■□□□□ 0.21
TNFP01375 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TNFP01375 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.37■□□□□ 0.21
TNFP01375 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms