Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC007967.2-201ENST00000432613 625 ntBASIC23.28■■□□□ 1.32
MSH5O43196 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC23.28■■□□□ 1.32
MSH5O43196 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 AC008840.1-201ENST00000512486 809 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 RNA5SP416-201ENST00000516838 111 ntBASIC23.28■■□□□ 1.32
MSH5O43196 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC23.28■■□□□ 1.32
MSH5O43196 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 LINC00648-204ENST00000557749 443 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC23.28■■□□□ 1.32
MSH5O43196 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 AC002044.3-201ENST00000623314 541 ntBASIC23.28■■□□□ 1.32
MSH5O43196 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
MSH5O43196 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 CLEC12B-201ENST00000338896 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 FUOM-202ENST00000368551 628 ntTSL 3 BASIC23.27■■□□□ 1.32
MSH5O43196 C1QTNF9B-201ENST00000382137 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC23.27■■□□□ 1.32
MSH5O43196 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 MUPP-201ENST00000438111 566 ntBASIC23.27■■□□□ 1.32
MSH5O43196 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC23.27■■□□□ 1.32
MSH5O43196 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH5O43196 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC23.27■■□□□ 1.32
MSH5O43196 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC23.27■■□□□ 1.32
MSH5O43196 AC005336.2-201ENST00000593183 939 ntBASIC23.27■■□□□ 1.32
MSH5O43196 AC100814.1-201ENST00000606963 623 ntBASIC23.27■■□□□ 1.32
MSH5O43196 PTMAP5-202ENST00000607242 1162 ntBASIC23.27■■□□□ 1.32
MSH5O43196 AL596442.2-201ENST00000610240 980 ntBASIC23.27■■□□□ 1.32
MSH5O43196 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH5O43196 Metazoa_SRP.91-201ENST00000622745 281 ntBASIC23.27■■□□□ 1.32
MSH5O43196 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH5O43196 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
MSH5O43196 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH5O43196 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH5O43196 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH5O43196 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH5O43196 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH5O43196 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH5O43196 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH5O43196 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH5O43196 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH5O43196 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC23.26■■□□□ 1.31
MSH5O43196 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC23.26■■□□□ 1.31
MSH5O43196 CETN4P-201ENST00000432407 469 ntBASIC23.26■■□□□ 1.31
MSH5O43196 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC23.26■■□□□ 1.31
MSH5O43196 MTND3P10-201ENST00000450967 341 ntBASIC23.26■■□□□ 1.31
MSH5O43196 AC018463.1-201ENST00000456674 917 ntBASIC23.26■■□□□ 1.31
MSH5O43196 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC23.26■■□□□ 1.31
MSH5O43196 AL136088.1-201ENST00000531002 541 ntTSL 4 BASIC23.26■■□□□ 1.31
MSH5O43196 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH5O43196 AC115102.1-201ENST00000558044 487 ntTSL 5 BASIC23.26■■□□□ 1.31
MSH5O43196 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH5O43196 AC119751.7-201ENST00000600494 245 ntBASIC23.26■■□□□ 1.31
MSH5O43196 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC23.26■■□□□ 1.31
MSH5O43196 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH5O43196 AC022960.3-201ENST00000619794 441 ntBASIC23.26■■□□□ 1.31
MSH5O43196 Z99129.2-201ENST00000619967 314 ntBASIC23.26■■□□□ 1.31
MSH5O43196 AC097478.3-201ENST00000620420 872 ntBASIC23.26■■□□□ 1.31
MSH5O43196 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC23.26■■□□□ 1.31
MSH5O43196 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC23.26■■□□□ 1.31
MSH5O43196 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH5O43196 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC23.26■■□□□ 1.31
MSH5O43196 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC23.26■■□□□ 1.31
MSH5O43196 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms