Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 AL355306.1-201ENST00000415580 579 ntBASIC17.96■□□□□ 0.47
SIX4Q9UIU6 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 AC011676.5-201ENST00000624864 2660 ntBASIC17.96■□□□□ 0.47
SIX4Q9UIU6 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SIX4Q9UIU6 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SIX4Q9UIU6 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.96■□□□□ 0.46
SIX4Q9UIU6 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
SIX4Q9UIU6 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
SIX4Q9UIU6 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
SIX4Q9UIU6 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 CEND1P1-201ENST00000451006 455 ntBASIC17.95■□□□□ 0.46
SIX4Q9UIU6 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 AC134684.3-201ENST00000641758 218 ntBASIC17.95■□□□□ 0.46
SIX4Q9UIU6 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.95■□□□□ 0.46
SIX4Q9UIU6 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 ACTG1P14-201ENST00000446382 1122 ntBASIC17.94■□□□□ 0.46
SIX4Q9UIU6 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 AC006538.1-201ENST00000567905 1585 ntBASIC17.94■□□□□ 0.46
SIX4Q9UIU6 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 HLA-A-202ENST00000376806 1854 ntBASIC17.94■□□□□ 0.46
SIX4Q9UIU6 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 UBALD1-205ENST00000590891 2641 ntBASIC17.94■□□□□ 0.46
SIX4Q9UIU6 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SIX4Q9UIU6 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 139.6 ms