Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 KRT8P49-201ENST00000604166 1432 ntBASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 AC005412.3-201ENST00000580309 715 ntBASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 PCDHA12-202ENST00000613593 2588 ntBASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM39Q9HCM9 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 TUBB8P12-201ENST00000308911 1335 ntBASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 TUBB7P-202ENST00000428444 1305 ntBASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 BCAR1-209ENST00000546196 1340 ntBASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 TUBB8P7-204ENST00000567960 1332 ntBASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 AC023274.1-201ENST00000418278 595 ntBASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 AC002347.1-201ENST00000569543 541 ntBASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM39Q9HCM9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AP001094.4-201ENST00000579008 2176 ntBASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AC025580.3-201ENST00000617932 1424 ntBASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AC004832.2-201ENST00000426397 482 ntBASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 KRT19P2-202ENST00000557173 1012 ntBASIC16.72■□□□□ 0.27
TRIM39Q9HCM9 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms