Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 AF186996.4-201ENST00000467186 377 ntBASIC17.43■□□□□ 0.38
PCDH9Q9HC56 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 AP002469.2-201ENST00000531724 424 ntBASIC17.43■□□□□ 0.38
PCDH9Q9HC56 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 AC139887.3-201ENST00000568585 713 ntBASIC17.43■□□□□ 0.38
PCDH9Q9HC56 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 KRT8P49-201ENST00000604166 1432 ntBASIC17.43■□□□□ 0.38
PCDH9Q9HC56 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 AL513523.2-202ENST00000427283 2040 ntBASIC17.42■□□□□ 0.38
PCDH9Q9HC56 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 AC006538.1-201ENST00000567905 1585 ntBASIC17.42■□□□□ 0.38
PCDH9Q9HC56 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 KRT18P67-201ENST00000432816 1264 ntBASIC17.42■□□□□ 0.38
PCDH9Q9HC56 RPS2P1-201ENST00000434010 821 ntBASIC17.42■□□□□ 0.38
PCDH9Q9HC56 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.42■□□□□ 0.38
PCDH9Q9HC56 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 AC079328.2-201ENST00000561241 3354 ntBASIC17.42■□□□□ 0.38
PCDH9Q9HC56 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDH9Q9HC56 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 AC018712.1-201ENST00000455767 687 ntBASIC17.41■□□□□ 0.38
PCDH9Q9HC56 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 OR7E14P-202ENST00000530490 1290 ntBASIC17.41■□□□□ 0.38
PCDH9Q9HC56 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 AL121894.2-201ENST00000602977 491 ntBASIC17.41■□□□□ 0.38
PCDH9Q9HC56 AL353135.1-201ENST00000606729 504 ntBASIC17.41■□□□□ 0.38
PCDH9Q9HC56 AC107918.4-202ENST00000641623 219 ntBASIC17.41■□□□□ 0.38
PCDH9Q9HC56 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms