Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCSER1Q9C0I3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCSER1Q9C0I3 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.83■□□□□ 0.6
CCSER1Q9C0I3 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCSER1Q9C0I3 GGT4P-201ENST00000623672 1708 ntBASIC18.83■□□□□ 0.6
CCSER1Q9C0I3 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCSER1Q9C0I3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 ALOX12P2-203ENST00000570921 1945 ntBASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 AL031731.1-201ENST00000642131 2094 ntBASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 IGLL3P-201ENST00000412472 434 ntBASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 HCG4B-203ENST00000450128 991 ntBASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 MIR4751-201ENST00000578027 74 ntBASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCSER1Q9C0I3 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 AC012569.1-201ENST00000591191 1524 ntBASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 MIR4515-201ENST00000584082 81 ntBASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CCSER1Q9C0I3 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCSER1Q9C0I3 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms