Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 DOC2GP-202ENST00000514950 1163 ntBASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 AC134043.2-201ENST00000624206 2238 ntBASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK3Q9BYB0 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SHANK3Q9BYB0 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 TPRX2P-201ENST00000535362 881 ntBASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 CTBP2P3-201ENST00000585629 1255 ntBASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 AL162274.1-201ENST00000617191 1098 ntBASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.02
SHANK3Q9BYB0 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 CD81-207ENST00000481687 890 ntTSL 2 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 AC092658.1-201ENST00000505836 891 ntBASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 AL390961.4-201ENST00000623958 2535 ntBASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
SHANK3Q9BYB0 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 AC024267.1-201ENST00000582320 895 ntBASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 RAD18-204ENST00000418463 563 ntTSL 4 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 RAD18-205ENST00000421052 582 ntTSL 3 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC21.43■■□□□ 1.02
SHANK3Q9BYB0 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms