Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.67■□□□□ 0.1
BEST3Q8N1M1 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CNN2P11-201ENST00000429351 262 ntBASIC15.66■□□□□ 0.1
BEST3Q8N1M1 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 AC092902.6-201ENST00000641783 218 ntBASIC15.66■□□□□ 0.1
BEST3Q8N1M1 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 EGFEM1P-202ENST00000431685 1563 ntBASIC15.66■□□□□ 0.1
BEST3Q8N1M1 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.66■□□□□ 0.1
BEST3Q8N1M1 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 ACTG1P14-201ENST00000446382 1122 ntBASIC15.65■□□□□ 0.1
BEST3Q8N1M1 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 AP002472.1-201ENST00000577490 586 ntBASIC15.65■□□□□ 0.1
BEST3Q8N1M1 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
BEST3Q8N1M1 AC016396.2-201ENST00000562575 1417 ntBASIC15.65■□□□□ 0.1
BEST3Q8N1M1 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms