Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 RCC2P3-201ENST00000418112 1537 ntBASIC10.49□□□□□ -0.73
LINC00643Q86TS7 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 MIR639-201ENST00000384974 98 ntBASIC10.49□□□□□ -0.73
LINC00643Q86TS7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 AC118758.2-201ENST00000614242 2813 ntBASIC10.49□□□□□ -0.73
LINC00643Q86TS7 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 GALC-206ENST00000544807 2528 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 MBLAC2-202ENST00000514906 1936 ntBASIC10.48□□□□□ -0.73
LINC00643Q86TS7 AC027612.1-201ENST00000445234 2395 ntBASIC10.48□□□□□ -0.73
LINC00643Q86TS7 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 SP100-205ENST00000409824 1802 ntTSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms