Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 DUX4L17-201ENST00000557360 1267 ntBASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 Z92544.3-201ENST00000624747 417 ntBASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.27■□□□□ 0.68
SH3RF1Q7Z6J0 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SH3RF1Q7Z6J0 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SH3RF1Q7Z6J0 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
SH3RF1Q7Z6J0 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SH3RF1Q7Z6J0 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.27■□□□□ 0.67
SH3RF1Q7Z6J0 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.67
SH3RF1Q7Z6J0 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SH3RF1Q7Z6J0 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
SH3RF1Q7Z6J0 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 AC092919.2-201ENST00000623631 1645 ntBASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 ACTG1P4-201ENST00000425123 1122 ntBASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 FAM86GP-201ENST00000448322 971 ntBASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 REXO1L3P-201ENST00000622202 1288 ntBASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 PCDHA14-201ENST00000506751 2298 ntBASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SH3RF1Q7Z6J0 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 AP002414.1-201ENST00000391405 1147 ntBASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 AJ011932.1-201ENST00000621707 465 ntBASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SH3RF1Q7Z6J0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms