Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 AC099336.1-201ENST00000417053 1171 ntBASIC17.57■□□□□ 0.4
CHD9Q3L8U1 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CHD9Q3L8U1 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 RNA5SP410-201ENST00000516285 106 ntBASIC17.56■□□□□ 0.4
CHD9Q3L8U1 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 KRT18P34-201ENST00000488218 1270 ntBASIC17.56■□□□□ 0.4
CHD9Q3L8U1 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 BTNL10-201ENST00000595971 695 ntBASIC17.56■□□□□ 0.4
CHD9Q3L8U1 AL391069.4-201ENST00000609583 481 ntBASIC17.56■□□□□ 0.4
CHD9Q3L8U1 AP001350.2-201ENST00000625104 1094 ntBASIC17.56■□□□□ 0.4
CHD9Q3L8U1 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.56■□□□□ 0.4
CHD9Q3L8U1 EGFEM1P-202ENST00000431685 1563 ntBASIC17.56■□□□□ 0.4
CHD9Q3L8U1 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 ELK2AP-201ENST00000392510 1007 ntBASIC17.55■□□□□ 0.4
CHD9Q3L8U1 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 CTBP2P5-201ENST00000454986 1264 ntBASIC17.55■□□□□ 0.4
CHD9Q3L8U1 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 TNXA-203ENST00000507684 2038 ntBASIC17.55■□□□□ 0.4
CHD9Q3L8U1 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CHD9Q3L8U1 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AC108860.2-201ENST00000562760 2183 ntBASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.54■□□□□ 0.4
CHD9Q3L8U1 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms