Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SPDYE9P-201ENST00000570642 692 ntBASIC16.24■□□□□ 0.19
COL28A1Q2UY09 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 SPDYE10P-202ENST00000612005 668 ntBASIC16.24■□□□□ 0.19
COL28A1Q2UY09 SPDYE8P-202ENST00000612377 668 ntBASIC16.24■□□□□ 0.19
COL28A1Q2UY09 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 AP001059.3-201ENST00000619053 235 ntBASIC16.24■□□□□ 0.19
COL28A1Q2UY09 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL28A1Q2UY09 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 U91328.1-201ENST00000437528 223 ntBASIC16.23■□□□□ 0.19
COL28A1Q2UY09 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 LINC00896-202ENST00000609602 2128 ntBASIC16.23■□□□□ 0.19
COL28A1Q2UY09 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 AC134043.2-201ENST00000624206 2238 ntBASIC16.23■□□□□ 0.19
COL28A1Q2UY09 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.23■□□□□ 0.19
COL28A1Q2UY09 AL353593.2-201ENST00000602529 1483 ntBASIC16.22■□□□□ 0.19
COL28A1Q2UY09 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 AL671277.1-201ENST00000429656 993 ntBASIC16.22■□□□□ 0.19
COL28A1Q2UY09 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL28A1Q2UY09 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms