Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CLRN1P58418 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLRN1P58418 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
CLRN1P58418 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.1■□□□□ 0.01
CLRN1P58418 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 KRT8P49-201ENST00000604166 1432 ntBASIC15.09■□□□□ 0.01
CLRN1P58418 FLJ38576-201ENST00000623820 2459 ntBASIC15.09■□□□□ 0.01
CLRN1P58418 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 AC078925.2-201ENST00000624013 1973 ntBASIC15.09■□□□□ 0.01
CLRN1P58418 AC099398.1-201ENST00000567919 2776 ntBASIC15.09■□□□□ 0.01
CLRN1P58418 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
CLRN1P58418 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CLRN1P58418 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.09■□□□□ 0.01
CLRN1P58418 RPS2P28-201ENST00000314255 741 ntBASIC15.09■□□□□ 0.01
CLRN1P58418 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.09■□□□□ 0.01
CLRN1P58418 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.09■□□□□ 0.01
CLRN1P58418 RN7SL510P-201ENST00000581311 263 ntBASIC15.09■□□□□ 0.01
CLRN1P58418 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.09■□□□□ 0.01
CLRN1P58418 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC15.09■□□□□ 0.01
CLRN1P58418 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 AF228730.7-201ENST00000641842 219 ntBASIC15.09■□□□□ 0.01
CLRN1P58418 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.09■□□□□ 0.01
CLRN1P58418 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLRN1P58418 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.09■□□□□ 0.01
CLRN1P58418 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN1P58418 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN1P58418 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN1P58418 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN1P58418 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN1P58418 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.08■□□□□ 0.01
CLRN1P58418 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN1P58418 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CLRN1P58418 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.08■□□□□ 0
CLRN1P58418 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
CLRN1P58418 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
CLRN1P58418 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.08■□□□□ 0
CLRN1P58418 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.08■□□□□ 0
CLRN1P58418 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.08■□□□□ 0
CLRN1P58418 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.08■□□□□ 0
CLRN1P58418 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.08■□□□□ 0
CLRN1P58418 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.08■□□□□ 0
CLRN1P58418 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 TP73-AS1-207ENST00000624167 988 ntBASIC15.08■□□□□ 0
CLRN1P58418 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.08■□□□□ 0
CLRN1P58418 AL805961.1-202ENST00000641562 540 ntBASIC15.08■□□□□ 0
CLRN1P58418 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.08■□□□□ 0
CLRN1P58418 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms