Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MRE11P49959 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MRE11P49959 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
MRE11P49959 AC006538.1-201ENST00000567905 1585 ntBASIC19.72■□□□□ 0.75
MRE11P49959 MIR3180-4-201ENST00000582223 153 ntBASIC19.72■□□□□ 0.75
MRE11P49959 AC022532.1-201ENST00000624563 1728 ntBASIC19.72■□□□□ 0.75
MRE11P49959 AL023973.1-201ENST00000624619 620 ntBASIC19.72■□□□□ 0.75
MRE11P49959 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MRE11P49959 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MRE11P49959 FAM45BP-202ENST00000592932 1624 ntBASIC19.72■□□□□ 0.75
MRE11P49959 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.72■□□□□ 0.75
MRE11P49959 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
MRE11P49959 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC19.72■□□□□ 0.75
MRE11P49959 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC19.72■□□□□ 0.75
MRE11P49959 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MRE11P49959 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MRE11P49959 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
MRE11P49959 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 AC006058.4-201ENST00000624016 1670 ntBASIC19.71■□□□□ 0.75
MRE11P49959 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MRE11P49959 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.71■□□□□ 0.75
MRE11P49959 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
MRE11P49959 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
MRE11P49959 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
MRE11P49959 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.71■□□□□ 0.75
MRE11P49959 AC106795.1-205ENST00000512851 1056 ntBASIC19.71■□□□□ 0.75
MRE11P49959 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.71■□□□□ 0.75
MRE11P49959 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.71■□□□□ 0.75
MRE11P49959 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.71■□□□□ 0.75
MRE11P49959 SLC25A6P4-201ENST00000586535 553 ntBASIC19.71■□□□□ 0.75
MRE11P49959 AL139424.1-201ENST00000607572 797 ntBASIC19.71■□□□□ 0.75
MRE11P49959 AC010653.2-201ENST00000623505 997 ntBASIC19.71■□□□□ 0.75
MRE11P49959 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.71■□□□□ 0.75
MRE11P49959 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC19.71■□□□□ 0.75
MRE11P49959 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.71■□□□□ 0.75
MRE11P49959 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MRE11P49959 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MRE11P49959 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MRE11P49959 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
MRE11P49959 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC19.7■□□□□ 0.74
MRE11P49959 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.7■□□□□ 0.74
MRE11P49959 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC19.7■□□□□ 0.74
MRE11P49959 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC19.7■□□□□ 0.74
MRE11P49959 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
MRE11P49959 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
MRE11P49959 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
MRE11P49959 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.7■□□□□ 0.74
MRE11P49959 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MRE11P49959 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.7■□□□□ 0.74
MRE11P49959 AC079781.3-201ENST00000449110 356 ntBASIC19.7■□□□□ 0.74
MRE11P49959 AC011506.1-201ENST00000474329 610 ntBASIC19.7■□□□□ 0.74
MRE11P49959 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.7■□□□□ 0.74
MRE11P49959 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.7■□□□□ 0.74
MRE11P49959 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 AC083849.1-201ENST00000615227 514 ntBASIC19.7■□□□□ 0.74
MRE11P49959 BX640515.1-201ENST00000617215 977 ntBASIC19.7■□□□□ 0.74
MRE11P49959 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.7■□□□□ 0.74
MRE11P49959 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.7■□□□□ 0.74
MRE11P49959 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC19.7■□□□□ 0.74
MRE11P49959 TNRC18P2-201ENST00000417666 2714 ntBASIC19.7■□□□□ 0.74
MRE11P49959 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
MRE11P49959 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.7■□□□□ 0.74
MRE11P49959 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.7■□□□□ 0.74
MRE11P49959 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
MRE11P49959 BX276092.7-203ENST00000637198 1536 ntBASIC19.7■□□□□ 0.74
MRE11P49959 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MRE11P49959 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.7■□□□□ 0.74
MRE11P49959 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.7■□□□□ 0.74
MRE11P49959 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC19.7■□□□□ 0.74
MRE11P49959 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MRE11P49959 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms