Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 FOSL1P1-201ENST00000511041 816 ntBASIC12.91□□□□□ -0.34
HLA-DMBP28068 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 AC091304.2-201ENST00000564639 760 ntBASIC12.91□□□□□ -0.34
HLA-DMBP28068 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 AC138894.3-201ENST00000603787 634 ntBASIC12.91□□□□□ -0.34
HLA-DMBP28068 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 AL391256.1-201ENST00000443260 1855 ntBASIC12.91□□□□□ -0.34
HLA-DMBP28068 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DMBP28068 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC12.91□□□□□ -0.34
HLA-DMBP28068 AC097637.2-201ENST00000624096 1997 ntBASIC12.9□□□□□ -0.34
HLA-DMBP28068 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 AGK-211ENST00000629555 2765 ntTSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 THAP5-204ENST00000438865 868 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 BET1L-206ENST00000486280 665 ntTSL 3 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 AC004817.3-201ENST00000602957 2129 ntBASIC12.9□□□□□ -0.34
HLA-DMBP28068 AC099336.1-202ENST00000602961 463 ntBASIC12.9□□□□□ -0.34
HLA-DMBP28068 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DMBP28068 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
HLA-DMBP28068 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
HLA-DMBP28068 ALOX12P2-203ENST00000570921 1945 ntBASIC12.9□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms