Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.26■□□□□ 0.35
COL6A3P12111 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
COL6A3P12111 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
COL6A3P12111 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC17.26■□□□□ 0.35
COL6A3P12111 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.26■□□□□ 0.35
COL6A3P12111 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC17.26■□□□□ 0.35
COL6A3P12111 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.26■□□□□ 0.35
COL6A3P12111 PPOX-204ENST00000462866 473 ntTSL 5 BASIC17.26■□□□□ 0.35
COL6A3P12111 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.26■□□□□ 0.35
COL6A3P12111 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.26■□□□□ 0.35
COL6A3P12111 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A3P12111 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC17.25■□□□□ 0.35
COL6A3P12111 MIR3907-201ENST00000579424 151 ntBASIC17.25■□□□□ 0.35
COL6A3P12111 AC091812.3-201ENST00000621362 345 ntBASIC17.25■□□□□ 0.35
COL6A3P12111 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 AC018735.1-201ENST00000437208 1502 ntBASIC17.25■□□□□ 0.35
COL6A3P12111 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC17.25■□□□□ 0.35
COL6A3P12111 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COL6A3P12111 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
COL6A3P12111 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.25■□□□□ 0.35
COL6A3P12111 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.25■□□□□ 0.35
COL6A3P12111 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.25■□□□□ 0.35
COL6A3P12111 AC244669.2-201ENST00000612320 853 ntBASIC17.25■□□□□ 0.35
COL6A3P12111 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A3P12111 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.24■□□□□ 0.35
COL6A3P12111 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.24■□□□□ 0.35
COL6A3P12111 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC17.24■□□□□ 0.35
COL6A3P12111 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC17.24■□□□□ 0.35
COL6A3P12111 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.24■□□□□ 0.35
COL6A3P12111 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC17.24■□□□□ 0.35
COL6A3P12111 AC244452.3-201ENST00000636814 210 ntBASIC17.24■□□□□ 0.35
COL6A3P12111 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 CNN2P8-201ENST00000421872 913 ntBASIC17.24■□□□□ 0.35
COL6A3P12111 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.24■□□□□ 0.35
COL6A3P12111 AP006547.1-201ENST00000563435 692 ntBASIC17.24■□□□□ 0.35
COL6A3P12111 AC079336.7-201ENST00000623428 1078 ntBASIC17.24■□□□□ 0.35
COL6A3P12111 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 AC135776.1-201ENST00000319817 2481 ntBASIC17.24■□□□□ 0.35
COL6A3P12111 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.24■□□□□ 0.35
COL6A3P12111 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.24■□□□□ 0.35
COL6A3P12111 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.24■□□□□ 0.35
COL6A3P12111 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A3P12111 AC126915.1-201ENST00000522847 1038 ntBASIC17.24■□□□□ 0.35
COL6A3P12111 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
COL6A3P12111 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
COL6A3P12111 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.23■□□□□ 0.35
COL6A3P12111 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 EEF1DP1-201ENST00000585891 896 ntBASIC17.23■□□□□ 0.35
COL6A3P12111 CU634019.7-201ENST00000624153 1185 ntBASIC17.23■□□□□ 0.35
COL6A3P12111 FP236241.2-201ENST00000624906 1185 ntBASIC17.23■□□□□ 0.35
COL6A3P12111 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A3P12111 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.23■□□□□ 0.35
COL6A3P12111 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL6A3P12111 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.23■□□□□ 0.35
COL6A3P12111 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC17.23■□□□□ 0.35
COL6A3P12111 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 AC245884.6-201ENST00000515672 1067 ntBASIC17.23■□□□□ 0.35
COL6A3P12111 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL6A3P12111 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A3P12111 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms