Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 DDX43P3-201ENST00000441064 443 ntBASIC14.18□□□□□ -0.14
ABCA1O95477 FAM207CP-201ENST00000443486 507 ntBASIC14.18□□□□□ -0.14
ABCA1O95477 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.18□□□□□ -0.14
ABCA1O95477 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
ABCA1O95477 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.18□□□□□ -0.14
ABCA1O95477 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.18□□□□□ -0.14
ABCA1O95477 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.18□□□□□ -0.14
ABCA1O95477 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.18□□□□□ -0.14
ABCA1O95477 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.18□□□□□ -0.14
ABCA1O95477 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.18□□□□□ -0.14
ABCA1O95477 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.18□□□□□ -0.14
ABCA1O95477 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.18□□□□□ -0.14
ABCA1O95477 REXO1L3P-201ENST00000622202 1288 ntBASIC14.18□□□□□ -0.14
ABCA1O95477 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
ABCA1O95477 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA1O95477 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
ABCA1O95477 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
ABCA1O95477 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA1O95477 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA1O95477 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
ABCA1O95477 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA1O95477 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA1O95477 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ABCA1O95477 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 PTCHD3P3-201ENST00000403073 906 ntBASIC14.17□□□□□ -0.14
ABCA1O95477 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.17□□□□□ -0.14
ABCA1O95477 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.17□□□□□ -0.14
ABCA1O95477 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.17□□□□□ -0.14
ABCA1O95477 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
ABCA1O95477 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
ABCA1O95477 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.17□□□□□ -0.14
ABCA1O95477 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.17□□□□□ -0.14
ABCA1O95477 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC14.17□□□□□ -0.14
ABCA1O95477 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
ABCA1O95477 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.17□□□□□ -0.14
ABCA1O95477 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.17□□□□□ -0.14
ABCA1O95477 AC008761.3-201ENST00000624803 892 ntBASIC14.17□□□□□ -0.14
ABCA1O95477 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
ABCA1O95477 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
ABCA1O95477 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.17□□□□□ -0.14
ABCA1O95477 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.17□□□□□ -0.14
ABCA1O95477 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
ABCA1O95477 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
ABCA1O95477 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ABCA1O95477 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
ABCA1O95477 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
ABCA1O95477 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.16□□□□□ -0.14
ABCA1O95477 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.16□□□□□ -0.14
ABCA1O95477 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.16□□□□□ -0.14
ABCA1O95477 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.16□□□□□ -0.14
ABCA1O95477 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.16□□□□□ -0.14
ABCA1O95477 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.16□□□□□ -0.14
ABCA1O95477 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.16□□□□□ -0.14
ABCA1O95477 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.16□□□□□ -0.14
ABCA1O95477 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 NME9-203ENST00000383180 2133 ntTSL 2 BASIC14.16□□□□□ -0.14
ABCA1O95477 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
ABCA1O95477 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
ABCA1O95477 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.16□□□□□ -0.14
ABCA1O95477 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ABCA1O95477 AC007274.1-201ENST00000439805 662 ntBASIC14.16□□□□□ -0.14
ABCA1O95477 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.16□□□□□ -0.14
ABCA1O95477 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.16□□□□□ -0.14
ABCA1O95477 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.16□□□□□ -0.14
ABCA1O95477 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms