Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CLDN3O15551 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 SLC22A20-204ENST00000530038 1673 ntBASIC18.42■□□□□ 0.54
CLDN3O15551 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.42■□□□□ 0.54
CLDN3O15551 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLDN3O15551 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.42■□□□□ 0.54
CLDN3O15551 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.42■□□□□ 0.54
CLDN3O15551 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 KRT18P13-201ENST00000400056 1290 ntBASIC18.42■□□□□ 0.54
CLDN3O15551 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 HCG4-201ENST00000418983 998 ntBASIC18.42■□□□□ 0.54
CLDN3O15551 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.42■□□□□ 0.54
CLDN3O15551 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.42■□□□□ 0.54
CLDN3O15551 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.42■□□□□ 0.54
CLDN3O15551 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.42■□□□□ 0.54
CLDN3O15551 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 AC131009.4-201ENST00000624048 1740 ntBASIC18.42■□□□□ 0.54
CLDN3O15551 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 PCDHB17P-201ENST00000539533 2393 ntBASIC18.42■□□□□ 0.54
CLDN3O15551 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 AC012569.1-201ENST00000591191 1524 ntBASIC18.42■□□□□ 0.54
CLDN3O15551 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLDN3O15551 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.42■□□□□ 0.54
CLDN3O15551 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CLDN3O15551 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CLDN3O15551 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLDN3O15551 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
CLDN3O15551 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.41■□□□□ 0.54
CLDN3O15551 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
CLDN3O15551 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.41■□□□□ 0.54
CLDN3O15551 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.41■□□□□ 0.54
CLDN3O15551 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CLDN3O15551 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CLDN3O15551 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CLDN3O15551 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLDN3O15551 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CLDN3O15551 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.4■□□□□ 0.54
CLDN3O15551 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN3O15551 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CLDN3O15551 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.4■□□□□ 0.54
CLDN3O15551 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN3O15551 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN3O15551 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.4■□□□□ 0.54
CLDN3O15551 AC087641.1-201ENST00000557561 1021 ntBASIC18.4■□□□□ 0.54
CLDN3O15551 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.4■□□□□ 0.54
CLDN3O15551 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 MIR3687-2-201ENST00000577708 61 ntBASIC18.4■□□□□ 0.54
CLDN3O15551 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.4■□□□□ 0.54
CLDN3O15551 MIR3687-1-201ENST00000614492 61 ntBASIC18.4■□□□□ 0.54
CLDN3O15551 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.4■□□□□ 0.54
CLDN3O15551 AP001350.2-201ENST00000625104 1094 ntBASIC18.4■□□□□ 0.54
CLDN3O15551 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CLDN3O15551 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN3O15551 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN3O15551 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.4■□□□□ 0.54
CLDN3O15551 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CLDN3O15551 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLDN3O15551 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLDN3O15551 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLDN3O15551 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms