Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC13.64□□□□□ -0.23
HMGB3O15347 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC13.64□□□□□ -0.23
HMGB3O15347 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.64□□□□□ -0.23
HMGB3O15347 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC13.64□□□□□ -0.23
HMGB3O15347 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC13.64□□□□□ -0.23
HMGB3O15347 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC13.64□□□□□ -0.23
HMGB3O15347 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
HMGB3O15347 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 CACUL1-201ENST00000369151 11311 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13.64□□□□□ -0.23
HMGB3O15347 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HMGB3O15347 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HMGB3O15347 SHANK2-218ENST00000601538 9062 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HMGB3O15347 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
HMGB3O15347 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.63□□□□□ -0.23
HMGB3O15347 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 SLC25A1P3-201ENST00000395415 828 ntBASIC13.63□□□□□ -0.23
HMGB3O15347 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
HMGB3O15347 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 AC116562.2-201ENST00000507042 360 ntBASIC13.63□□□□□ -0.23
HMGB3O15347 NUDT16P1-203ENST00000513809 620 ntBASIC13.63□□□□□ -0.23
HMGB3O15347 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC13.63□□□□□ -0.23
HMGB3O15347 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC13.63□□□□□ -0.23
HMGB3O15347 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 AC024243.1-201ENST00000609234 778 ntBASIC13.63□□□□□ -0.23
HMGB3O15347 AL139327.4-201ENST00000612362 153 ntBASIC13.63□□□□□ -0.23
HMGB3O15347 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.63□□□□□ -0.23
HMGB3O15347 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.63□□□□□ -0.23
HMGB3O15347 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC13.63□□□□□ -0.23
HMGB3O15347 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.63□□□□□ -0.23
HMGB3O15347 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.63□□□□□ -0.23
HMGB3O15347 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
HMGB3O15347 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HMGB3O15347 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
HMGB3O15347 PBK-203ENST00000522944 1499 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC13.62□□□□□ -0.23
HMGB3O15347 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HMGB3O15347 EXOC8-201ENST00000366645 5100 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
HMGB3O15347 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
HMGB3O15347 HIST1H2APS4-201ENST00000362070 348 ntBASIC13.62□□□□□ -0.23
HMGB3O15347 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.62□□□□□ -0.23
HMGB3O15347 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 RPPH1-201ENST00000516869 333 ntBASIC13.62□□□□□ -0.23
HMGB3O15347 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 AL353719.1-201ENST00000566847 864 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms